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Atomistic details of protein dynamics and the role of hydration water...

by S Khodadadi, Alexei P Sokolov
Publication Type
Journal
Journal Name
Biochimica et Biophysica Acta - General Subjects
Publication Date
Page Numbers
3546 to 3552
Volume
1861

The importance of protein dynamics for their biological activity is nowwell recognized. Different experimental
and computational techniques have been employed to study protein dynamics, hierarchy of different
processes and the coupling between protein and hydration water dynamics. Yet, understanding the atomistic details of protein dynamics and the role of hydration water remains rather limited. Scoop of review: Based on overview of neutron scattering, molecular dynamic simulations, NMR and dielectric spectroscopy results we present a general picture of protein dynamics covering time scales from faster than ps to microseconds and the influence of hydration water on different relaxation processes. Major conclusions: Internal protein dynamics spread over a wide time range fromfaster than picosecond to longer than microseconds. We suggest that the structural relaxation in hydrated proteins appears on the microsecond time scale, while faster processes present mostly motion of side groups and some domains. Hydration water plays a crucial role in protein dynamics on all time scales. It controls the coupled protein-hydration water relaxation on 10–100 ps time scale. This process defines the friction for slower protein dynamics. Analysis suggests that changes in amount of hydration water affect not only general friction, but also influence significantly the
protein's energy landscape.