Publication Type
Conference Paper
Book Title
Proceedings of Cray Users Group 2008 Conference
Publication Date
Page Number
1
Publisher Location
Portland, Washington, United States of America
Conference Name
Cray Users Group 2008, CSC (Finish IT Center for Science)
Conference Location
Helsinki, Finland
Conference Sponsor
Cray, Inc.,
Conference Date
-
Abstract
Our CUG07 paper demonstrated the Cray Smith-Waterman FPGA design could achieve 50-100X speedup over a single Opteron. This paper extends that work to demonstrate loosely-coupled human chromosome-to-chromosome searches, run on 100's of FPGAs, can exceed 1000X speedup. We examine how this design performs on future FPGA-enabled Cray systems.