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Understanding SYCL Portability for Pseudorandom Number Generation: a Case Study with Gene-Expression Connectivity Mapping

by Zheming Jin, Jeffrey S Vetter
Publication Type
Conference Paper
Book Title
2023 IEEE International Parallel and Distributed Processing Symposium Workshops
Publication Date
Page Numbers
295 to 298
Publisher Location
New Jersey, United States of America
Conference Name
37th IEEE International Parallel and Distributed Processing Symposium (IPDPS)
Conference Location
St. Petersburg, Florida, United States of America
Conference Sponsor
IEEE
Conference Date
-

Towards the goal of improving functional and performance portability of SYCL, we study a bioinformatics application that has been accelerated with CUDA and fast pseudorandom number generation on a GPU. We describe the experience of migrating pseudorandom number generation from CUDA to SYCL, evaluate the performance of pseudorandom number generators using the CUDA random number generation library, suggest the support of the XORWOW pseudorandom number generator in the oneAPI math kernel library (oneMKL) interface for performance portability, and identify the performance gap using the MKL interface in SYCL that supports pseudorandom number generation with third-party libraries. We hope that the results are valuable for the development of the SYCL ecosystem.