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Filter pruning of Convolutional Neural Networks for text classification: A case study of cancer pathology report comprehension

by Hong Jun Yoon, Sarah Robinson, James B Christian, John X Qiu, Georgia Tourassi
Publication Type
Conference Paper
Book Title
2018 IEEE EMBS International Conference on Biomedical & Health Informatics (BHI)
Publication Date
Page Numbers
345 to 348
Issue
0
Publisher Location
New Jersey, United States of America
Conference Name
Biomedical and Health Informatics (BHI 2018)
Conference Location
Las Vegas, Nevada, United States of America
Conference Sponsor
IEEE
Conference Date
-

Convolutional Neural Networks (CNN) have recently demonstrated effective performance in many Natural Language Processing tasks. In this study, we explore a novel approach for pruning a CNN's convolution filters using our new data-driven utility score. We have applied this technique to an information extraction task of classifying a dataset of cancer pathology reports by cancer type, a highly imbalanced dataset. Compared to standard CNN training, our new algorithm resulted in a nearly .07 increase in the micro-averaged F1-score and a strong .22 increase in the macro-averaged F1-score using a model with nearly a third fewer network weights. We show how directly utilizing a network's interpretation of data can result in strong performance gains, particularly with severely imbalanced datasets.