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Genetic analysis revealed connections between inflammatory activity and development of atomic dermatitis, according to researchers from the UPenn School of Medicine, the Perelman School of Medicine, and Oak Ridge National Laboratory. Credit: Kang Ko/UPenn

University of Pennsylvania researchers called on computational systems biology expertise at Oak Ridge National Laboratory to analyze large datasets of single-cell RNA sequencing from skin samples afflicted with atopic dermatitis.

A new process developed by Oak Ridge National Laboratory leverages deep learning techniques to study cell movements in a simulated environment, guided by simple physics rules similar to video-game play. Credit: MSKCC and UTK

Scientists have developed a novel approach to computationally infer previously undetected behaviors within complex biological environments by analyzing live, time-lapsed images that show the positioning of embryonic cells in C. elegans, or roundworms. Their published methods could be used to reveal hidden biological activity. 

The ectomycorrhizal fungus Laccaria bicolor, shown in green, envelops the roots of a transgenic switchgrass plant. Switchgrass is not known to interact with this type of fungi naturally; the added PtLecRLK1 gene tells the plant to engage the fungus. Credit: ORNL, U.S. Dept. of Energy

An ORNL team has successfully introduced a poplar gene into switchgrass, an important biofuel source, that allows switchgrass to interact with a beneficial fungus, ultimately boosting the grass’ growth and viability in changing environments.

A team of scientists found that microbes at the SPRUCE experiment in the Minnesota peatlands are increasing production of methane under warming conditions. Credit: ORNL, U.S. Dept. of Energy

Scientists studying a unique whole-ecosystem warming experiment in the Minnesota peatlands found that microorganisms are increasing methane production faster than carbon dioxide production. 

Scientists genetically engineered bacteria for itaconic acid production, creating dynamic controls that separate microbial growth and production phases for increased efficiency and acid yield. Credit: NREL

A research team led by Oak Ridge National Laboratory bioengineered a microbe to efficiently turn waste into itaconic acid, an industrial chemical used in plastics and paints.

Saplings in an aspen grove recovering from wildfire have more fungal pathogens in their leaves than the original trees. Credit: Chris Schadt/ORNL, U.S. Dept. of Energy

An Oak Ridge National Laboratory research team discovered that aspen saplings emerging after wildfire have less diverse microbiomes and more pathogens in their leaves, providing new insights about how fire affects ecosystem recovery.

Fungi use signaling molecules called LCOs to communicate with each other and to regulate growth. Credit: Jessy Labbe/Oak Ridge National Laboratory, U.S. Dept. of Energy

Oak Ridge National Laboratory and collaborators have discovered that signaling molecules known to trigger symbiosis between plants and soil bacteria are also used by almost all fungi as chemical signals to communicate with each other.

Diverse evidence shows that plants and soil will likely capture and hold more carbon in response to increasing levels of carbon dioxide in the atmosphere, according to an analysis published by an international research team led by Oak Ridge National Laboratory.

Diverse evidence shows that plants and soil will likely capture and hold more carbon in response to increasing levels of carbon dioxide in the atmosphere, according to an analysis